Publications (h-index: 15; *undergraduate student author; mentored student authors: 11)
26. Oritz J*, Bobkov YV, DeBiasse MB, Mitchell D, Edgar A, Martindale MQ, Moss AG, Hammar K, Babonis LS, Ryan JF (accepted) Independent innexin radiation shaped signaling in ctenophores. Molecular Biology and Evolution. *Undergraduate author
Preprint: biorxiv.org/content/10.1101/2022.10.11.511657v1
25. DeBiasse MB, Stubler AS, Kelly MW (2022) Comparative transcriptomics reveals altered species interaction between the sponge Cliona varians and the coral Porites furcata under ocean acidification. Molecular Ecology. PDF
24. DeBiasse MB, Schiebelhut LM, Escalona M, Beraut E, Fairbairn C, Marimuthu M, Nguyen O, Sahasrabudhe R, Dawson MN (2022) A chromosome-level reference genome for the giant pink sea star, Pisaster brevispinus, a species severely impacted by wasting. Journal of Heredity. PDF
23. Paggeot LX, DeBiasse MB, Escalona M, Beraut E, Fairbairn C, Marimuthu M, Nguyen O, Sahasrabudhe R, Dawson MN (2022) Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer. Journal of Heredity. PDF
22. Bernardi G, DeBiasse MB, Escalona M, Marimuthu M, Nguyen O, Sacco S, Beraut E, Miller C, Toffelmier C, Shaffer BH (2022) Reference genome of the California Sheephead, Semicossyphus pulcher (Labridae, Perciformes), a keystone fish predator in kelp forest ecosystems. Journal of Heredity. PDF
21. Ketchum RN, Smith EG, DeBiasse MB, Vaughan GO, McPharland D, Leach WB, Al-Mansoori N, Ryan JF, Burt JA, Reitzel AM (2020) Population genomic analyses of the sea urchin Echinometra sp. EZ across an extreme environmental gradient. Genome Biology and Evolution. PDF
20. DeBiasse MB, Colgan W*, Harris L*, Davidson B, JF Ryan (2020) Inferring tunicate relationships and the evolution of the tunicate Hox cluster with the genome of Corella inflata. Genome Biology and Evolution. *Undergraduate author. PDF
19. Dardaillon J, Dauga D, Simion P, Onuma T, DeBiasse MB, Louis A, Naville M, Besnardeau L, Reeves W, Wang Kai, Fagotto M, Guéroult-Bellone M, Fujiwara S, Dumollard R, Veeman M, Volff J, Roest Crollius H, Douzery E, Ryan JF, Davidson B, NISHIDA, Dantec C, Lemaire P (2019) ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates. Nucleic Acids Research. PDF
18. Colgan W*, Leanza A, Hwang A, DeBiasse MB, Llosa I*, Rodrigues D*, Adhikari H*, Barreto Corona G*, Bock S*, Carillo-Perez A*, Currie M*, Darkoa-Larbi S, Dellal D, Gutow H*, Hokama P*, Kibby E*, Linhart N*, Moody S*, Naganuma A*, Nguyen D, Stanton R*, Stark S, Tumey C*, Velleca A, Vu, N*, Ryan JF, Davidson B (2019) Variable levels of drift in tunicate cardiopharyngeal gene regulatory elements. EvoDevo. *Undergraduate author. PDF
17. Pastrana C*, DeBiasse MB, Ryan JF (2019) Sponges lack ParaHox genes. Genome Biology and Evolution. *Undergraduate author. PDF
16. DeBiasse MB, Ryan JF (2019) Phylotocol: promoting transparency and overcoming bias in phylogenetics. Systematic Biology. PDF
15. Richards VP, DeBiasse MB, Shivji MS (2019) Deep mitochondrial lineage divergence among populations of the southern stingray (Hypanus americana (Hildebrand & Schroeder, 1928)) throughout the Southeastern United States and Caribbean. Marine Biodiversity. PDF
14. Ketchum R, DeBiasse MB, Ryan JF, Burt J, Reitzel A (2018) The complete mitochondrial genome of the sea urchin Echinometra sp. EZ. Mitochondrial DNA Part B: Resources. PDF
13. Babonis LS, DeBiasse MB, Francis WR, Christianson LM, Haddock SHD, Martindale MQ, Ryan JF (2018) Integrating embryonic development and evolutionary history to characterize tentacle-specific cell types in a ctenophore. Molecular Biology and Evolution. PDF
12. Rivest EB, Kelly MW, DeBiasse MB, Hofmann GE (2018) Host and symbionts in Pocillopora damicornis larvae display different transcriptomic responses to ocean acidification. Frontiers in Marine Science. PDF
11. DeBiasse MB, Kawji Y*, Kelly MW (2018) Phenotypic and transcriptomic responses to salinity stress across genetically and geographically divergent Tigriopus californicus populations. Molecular Ecology. *Undergraduate author. PDF
10. Kelly MW, Pankey MS, DeBiasse MB, Plachetzki DC (2017) Adaptation to heat stress reduces phenotypic and gene expression plasticity in a marine copepod. Functional Ecology. PDF
9. Kelly MW, DeBiasse MB, Villela V*, Roberts H*, Cecola C* (2016) Adaptation to climate change: trade-offs among responses to multiple stressors. Evolutionary Applications. *Undergraduate author. PDF
8. DeBiasse MB, Richards VP. Shivji MS, Hellberg ME (2016) Shared phylogeographic breaks in a Caribbean coral reef sponge and its invertebrate commensals. Journal of Biogeography. PDF
7. Brzeski KE, DeBiasse MB, Rabon Jr. DR, Chamberlain MJ, Taylor SS (2016) Mitochondrial DNA variation in Southeastern pre-Columbian canids. Journal of Heredity. PDF
6. DeBiasse MB, Kelly MK (2016) Plastic and evolved responses to global change: what can we learn from comparative transcriptomics? Journal of Heredity. PDF
5. DeBiasse MB, Hellberg ME (2015) Discordance between morphological and molecular species boundaries among Caribbean species of the reef sponge Callyspongia. Ecology and Evolution. PDF
4. Richards VP, DeBiasse MB, Shivji MS (2015) Genetic evidence supports larval retention in the Western Caribbean for an invertebrate with high dispersal capability (Ophiothrix suensonii: Echinodermata, Ophiuroidea). Coral Reefs. PDF
3. Prada C, DeBiasse MB, Neigel JE, Yedock B, Stake J, Forsman ZH, Baums IB, Hellberg ME (2014) Genetic species delineation among branching Caribbean Porites corals. Coral Reefs. PDF
2. DeBiasse MB, Nelson BJ, Hellberg ME (2014) Evaluating summary statistics used to test for incomplete lineage sorting: mito-nuclear discordance in the reef sponge Callyspongia vaginalis. Molecular Ecology. PDF
1. DeBiasse MB, Richards VP, Shivji MS (2010) Genetic assessment of connectivity in the common reef sponge, Callyspongia vaginalis (Demospongiae: Haplosclerida) reveals high population structure along the Florida reef tract. PDF
Coming soon...
DeBiasse MB, Buckenmeyer A*, Macrander J, Babonis LS, Bentlage B, Cartwright P, Prada C, Reitzel AM, Stampar SN, Collins AG, Daly M, Ryan JF (in revision) Illuminating the Cnidaria tree of life with a phylogenomic backbone fitted with hundreds of 18S leaves. Bulletin of the Society of Systematic Biologists. *Undergraduate author. Preprint: biorxiv.org.content/10/1101/2022.10.03.510641v1
DeBiasse MB, Schiebelhut LM, Dawson MN (in prep) Comparative genomics of sea star wasting across the asteroid tree using chromosome-level assemblies.
Hernandez AM, DeBiasse MB, Dykes LL, Edgar A, Hayes DT, Grosso DJ, Babonis LS, Martindale MQ, Ryan JF (in prep) The genome of a ctenophore-eating ctenophore reveals evolutionary genomic and transcriptomic dynamics within Ctenophora
Stampar SN, Maronna MM, Kitahara MV, Lopes CSS, Santos TB, Reimer JD, Gameiro EM, Yap NWL, Neo ML, Sumida PY, Klompen AML, Macrander J, Reitzel AM, DeBiasse MB, Ryan JF, Daly M, Broe M, Morandini AC, Migotto AE (in prep) Evolution in Ceriantharia (Cnidaria): life cycle plasticity blurs traditional systematics in cerianthids.
26. Oritz J*, Bobkov YV, DeBiasse MB, Mitchell D, Edgar A, Martindale MQ, Moss AG, Hammar K, Babonis LS, Ryan JF (accepted) Independent innexin radiation shaped signaling in ctenophores. Molecular Biology and Evolution. *Undergraduate author
Preprint: biorxiv.org/content/10.1101/2022.10.11.511657v1
25. DeBiasse MB, Stubler AS, Kelly MW (2022) Comparative transcriptomics reveals altered species interaction between the sponge Cliona varians and the coral Porites furcata under ocean acidification. Molecular Ecology. PDF
24. DeBiasse MB, Schiebelhut LM, Escalona M, Beraut E, Fairbairn C, Marimuthu M, Nguyen O, Sahasrabudhe R, Dawson MN (2022) A chromosome-level reference genome for the giant pink sea star, Pisaster brevispinus, a species severely impacted by wasting. Journal of Heredity. PDF
23. Paggeot LX, DeBiasse MB, Escalona M, Beraut E, Fairbairn C, Marimuthu M, Nguyen O, Sahasrabudhe R, Dawson MN (2022) Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer. Journal of Heredity. PDF
22. Bernardi G, DeBiasse MB, Escalona M, Marimuthu M, Nguyen O, Sacco S, Beraut E, Miller C, Toffelmier C, Shaffer BH (2022) Reference genome of the California Sheephead, Semicossyphus pulcher (Labridae, Perciformes), a keystone fish predator in kelp forest ecosystems. Journal of Heredity. PDF
21. Ketchum RN, Smith EG, DeBiasse MB, Vaughan GO, McPharland D, Leach WB, Al-Mansoori N, Ryan JF, Burt JA, Reitzel AM (2020) Population genomic analyses of the sea urchin Echinometra sp. EZ across an extreme environmental gradient. Genome Biology and Evolution. PDF
20. DeBiasse MB, Colgan W*, Harris L*, Davidson B, JF Ryan (2020) Inferring tunicate relationships and the evolution of the tunicate Hox cluster with the genome of Corella inflata. Genome Biology and Evolution. *Undergraduate author. PDF
19. Dardaillon J, Dauga D, Simion P, Onuma T, DeBiasse MB, Louis A, Naville M, Besnardeau L, Reeves W, Wang Kai, Fagotto M, Guéroult-Bellone M, Fujiwara S, Dumollard R, Veeman M, Volff J, Roest Crollius H, Douzery E, Ryan JF, Davidson B, NISHIDA, Dantec C, Lemaire P (2019) ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates. Nucleic Acids Research. PDF
18. Colgan W*, Leanza A, Hwang A, DeBiasse MB, Llosa I*, Rodrigues D*, Adhikari H*, Barreto Corona G*, Bock S*, Carillo-Perez A*, Currie M*, Darkoa-Larbi S, Dellal D, Gutow H*, Hokama P*, Kibby E*, Linhart N*, Moody S*, Naganuma A*, Nguyen D, Stanton R*, Stark S, Tumey C*, Velleca A, Vu, N*, Ryan JF, Davidson B (2019) Variable levels of drift in tunicate cardiopharyngeal gene regulatory elements. EvoDevo. *Undergraduate author. PDF
17. Pastrana C*, DeBiasse MB, Ryan JF (2019) Sponges lack ParaHox genes. Genome Biology and Evolution. *Undergraduate author. PDF
16. DeBiasse MB, Ryan JF (2019) Phylotocol: promoting transparency and overcoming bias in phylogenetics. Systematic Biology. PDF
15. Richards VP, DeBiasse MB, Shivji MS (2019) Deep mitochondrial lineage divergence among populations of the southern stingray (Hypanus americana (Hildebrand & Schroeder, 1928)) throughout the Southeastern United States and Caribbean. Marine Biodiversity. PDF
14. Ketchum R, DeBiasse MB, Ryan JF, Burt J, Reitzel A (2018) The complete mitochondrial genome of the sea urchin Echinometra sp. EZ. Mitochondrial DNA Part B: Resources. PDF
13. Babonis LS, DeBiasse MB, Francis WR, Christianson LM, Haddock SHD, Martindale MQ, Ryan JF (2018) Integrating embryonic development and evolutionary history to characterize tentacle-specific cell types in a ctenophore. Molecular Biology and Evolution. PDF
12. Rivest EB, Kelly MW, DeBiasse MB, Hofmann GE (2018) Host and symbionts in Pocillopora damicornis larvae display different transcriptomic responses to ocean acidification. Frontiers in Marine Science. PDF
11. DeBiasse MB, Kawji Y*, Kelly MW (2018) Phenotypic and transcriptomic responses to salinity stress across genetically and geographically divergent Tigriopus californicus populations. Molecular Ecology. *Undergraduate author. PDF
10. Kelly MW, Pankey MS, DeBiasse MB, Plachetzki DC (2017) Adaptation to heat stress reduces phenotypic and gene expression plasticity in a marine copepod. Functional Ecology. PDF
9. Kelly MW, DeBiasse MB, Villela V*, Roberts H*, Cecola C* (2016) Adaptation to climate change: trade-offs among responses to multiple stressors. Evolutionary Applications. *Undergraduate author. PDF
8. DeBiasse MB, Richards VP. Shivji MS, Hellberg ME (2016) Shared phylogeographic breaks in a Caribbean coral reef sponge and its invertebrate commensals. Journal of Biogeography. PDF
7. Brzeski KE, DeBiasse MB, Rabon Jr. DR, Chamberlain MJ, Taylor SS (2016) Mitochondrial DNA variation in Southeastern pre-Columbian canids. Journal of Heredity. PDF
6. DeBiasse MB, Kelly MK (2016) Plastic and evolved responses to global change: what can we learn from comparative transcriptomics? Journal of Heredity. PDF
5. DeBiasse MB, Hellberg ME (2015) Discordance between morphological and molecular species boundaries among Caribbean species of the reef sponge Callyspongia. Ecology and Evolution. PDF
4. Richards VP, DeBiasse MB, Shivji MS (2015) Genetic evidence supports larval retention in the Western Caribbean for an invertebrate with high dispersal capability (Ophiothrix suensonii: Echinodermata, Ophiuroidea). Coral Reefs. PDF
3. Prada C, DeBiasse MB, Neigel JE, Yedock B, Stake J, Forsman ZH, Baums IB, Hellberg ME (2014) Genetic species delineation among branching Caribbean Porites corals. Coral Reefs. PDF
2. DeBiasse MB, Nelson BJ, Hellberg ME (2014) Evaluating summary statistics used to test for incomplete lineage sorting: mito-nuclear discordance in the reef sponge Callyspongia vaginalis. Molecular Ecology. PDF
1. DeBiasse MB, Richards VP, Shivji MS (2010) Genetic assessment of connectivity in the common reef sponge, Callyspongia vaginalis (Demospongiae: Haplosclerida) reveals high population structure along the Florida reef tract. PDF
Coming soon...
DeBiasse MB, Buckenmeyer A*, Macrander J, Babonis LS, Bentlage B, Cartwright P, Prada C, Reitzel AM, Stampar SN, Collins AG, Daly M, Ryan JF (in revision) Illuminating the Cnidaria tree of life with a phylogenomic backbone fitted with hundreds of 18S leaves. Bulletin of the Society of Systematic Biologists. *Undergraduate author. Preprint: biorxiv.org.content/10/1101/2022.10.03.510641v1
DeBiasse MB, Schiebelhut LM, Dawson MN (in prep) Comparative genomics of sea star wasting across the asteroid tree using chromosome-level assemblies.
Hernandez AM, DeBiasse MB, Dykes LL, Edgar A, Hayes DT, Grosso DJ, Babonis LS, Martindale MQ, Ryan JF (in prep) The genome of a ctenophore-eating ctenophore reveals evolutionary genomic and transcriptomic dynamics within Ctenophora
Stampar SN, Maronna MM, Kitahara MV, Lopes CSS, Santos TB, Reimer JD, Gameiro EM, Yap NWL, Neo ML, Sumida PY, Klompen AML, Macrander J, Reitzel AM, DeBiasse MB, Ryan JF, Daly M, Broe M, Morandini AC, Migotto AE (in prep) Evolution in Ceriantharia (Cnidaria): life cycle plasticity blurs traditional systematics in cerianthids.